Dca18953.1
Annotation
- 3-exons
- f-1
- sp|Q7Y1N4_ORYSJ#Putative retrotransposon gag protein#Oryza sativa subsp japonica (Rice)#Name=OSJNBa0053G10.17#GO:0003676;GO:0008270#2F0P0C
- Repeat List (scaffold1990)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca18953.1 |
106 |
498 |
504 |
25.79 |
393 |
30 |
3e-42
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q7Y1N4_ORYSJ |
69 |
490 |
697 |
60.54 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca18953.1 |
435 |
501 |
504 |
4.76 |
67 |
36 |
3e-06
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os09t0122300-01 |
77 |
142 |
150 |
44 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold1990 |
Augustus |
mRNA |
22867 |
24748 |
. |
+ |
. |
ID=Dca18953.1;Parent=Dca18953 |
| scaffold1990 |
Augustus |
exon |
22867 |
23184 |
. |
+ |
. |
ID=Dca18953.1.exon1;Parent=Dca18953.1 |
| scaffold1990 |
Augustus |
exon |
23274 |
23903 |
. |
+ |
. |
ID=Dca18953.1.exon2;Parent=Dca18953.1 |
| scaffold1990 |
Augustus |
exon |
24182 |
24748 |
. |
+ |
. |
ID=Dca18953.1.exon3;Parent=Dca18953.1 |
