Carnation DB

Dca19285.1

Annotation

5-exons
f-1
sp|B9GWE6_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_830825#GO:0016021;GO:0004252;GO:0006508#1F1P1C
sp|D7M0H4_ARALL#Rhomboid family protein#Arabidopsis lyrata subsp lyrata (Lyre-leaved rock-cress)#ORFNames=ARALYDRAFT_487551#GO:0016021;GO:0004252;GO:0006508#1F1P1C
Repeat List (scaffold200)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca19285.1	1	319	321	69.47	319	70	1e-127
Target_name	Start	End	Length	Cov(%)
sp\|B9GWE6_POPTR	1	319	321	99.37

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca19285.1	28	319	321	63.55	292	70	5e-120
Target_name	Start	End	Length	Cov(%)
Os09t0525900-01	30	321	324	90.12

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold200	Augus-PASA	mRNA	65358	68098	.	-	.	ID=Dca19285.1;Parent=Dca19285
scaffold200	Augus-PASA	exon	65358	65469	.	-	.	ID=Dca19285.1.exon1;Parent=Dca19285.1
scaffold200	Augus-PASA	exon	65730	65980	.	-	.	ID=Dca19285.1.exon2;Parent=Dca19285.1
scaffold200	Augus-PASA	exon	66294	66457	.	-	.	ID=Dca19285.1.exon3;Parent=Dca19285.1
scaffold200	Augus-PASA	exon	66556	66719	.	-	.	ID=Dca19285.1.exon4;Parent=Dca19285.1
scaffold200	Augus-PASA	exon	67824	68098	.	-	.	ID=Dca19285.1.exon5;Parent=Dca19285.1