Dca19443.1
Annotation
- 3-exons
- f-1
- sp|B9IGK0_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_577085#unknown#0F0P0C
- AT5G01660.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Development/cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: DCD (Development and Cell Death) domain protein (TAIR:AT3G11000.1); Has 16133 Blast hits to 7053 proteins in 482 species: Archae - 40; Bacteria - 1227; Metazoa - 10756; Fungi - 311; Plants - 1896; Viruses - 673; Other Eukaryotes - 1230 (source: NCBI BLink). | chr5:244504-248442 REVERSE LENGTH=656
- Repeat List (scaffold2010)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca19443.1 |
2 |
118 |
141 |
51.06 |
117 |
62 |
1e-36
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|B9IGK0_POPTR |
5 |
110 |
657 |
16.13 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca19443.1 |
15 |
117 |
141 |
48.22 |
103 |
67 |
1e-35
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT5G01660.1 |
10 |
101 |
656 |
14.02 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold2010 |
Augustus |
mRNA |
50761 |
51489 |
. |
- |
. |
ID=Dca19443.1;Parent=Dca19443 |
| scaffold2010 |
Augustus |
exon |
50761 |
50838 |
. |
- |
. |
ID=Dca19443.1.exon1;Parent=Dca19443.1 |
| scaffold2010 |
Augustus |
exon |
50954 |
51135 |
. |
- |
. |
ID=Dca19443.1.exon2;Parent=Dca19443.1 |
| scaffold2010 |
Augustus |
exon |
51324 |
51489 |
. |
- |
. |
ID=Dca19443.1.exon3;Parent=Dca19443.1 |
