Carnation DB

Dca19544.1

Annotation

9-exons
f-1
sp|B9I9A0_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_774612#unknown#0F0P0C
Os10t0405500-01 Coiled-coil protein, Homologous chromosome pairing and synapsis in meiosis
Repeat List (scaffold202)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca19544.1	320	660	683	17.27	341	35	2e-40
Target_name	Start	End	Length	Cov(%)
sp\|B9I9A0_POPTR	481	789	798	38.72

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca19544.1	429	679	683	12.88	251	35	1e-36
Target_name	Start	End	Length	Cov(%)
AT2G46980.2	540	792	793	31.9

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold202	Augus-PASA	mRNA	64043	69206	.	-	.	ID=Dca19544.1;Parent=Dca19544
scaffold202	Augus-PASA	exon	64043	64114	.	-	.	ID=Dca19544.1.exon1;Parent=Dca19544.1
scaffold202	Augus-PASA	exon	64782	64873	.	-	.	ID=Dca19544.1.exon2;Parent=Dca19544.1
scaffold202	Augus-PASA	exon	65514	65648	.	-	.	ID=Dca19544.1.exon3;Parent=Dca19544.1
scaffold202	Augus-PASA	exon	66098	66156	.	-	.	ID=Dca19544.1.exon4;Parent=Dca19544.1
scaffold202	Augus-PASA	exon	66234	66383	.	-	.	ID=Dca19544.1.exon5;Parent=Dca19544.1
scaffold202	Augus-PASA	exon	66482	66548	.	-	.	ID=Dca19544.1.exon6;Parent=Dca19544.1
scaffold202	Augus-PASA	exon	66655	66756	.	-	.	ID=Dca19544.1.exon7;Parent=Dca19544.1
scaffold202	Augus-PASA	exon	67674	67809	.	-	.	ID=Dca19544.1.exon8;Parent=Dca19544.1
scaffold202	Augus-PASA	exon	67968	69206	.	-	.	ID=Dca19544.1.exon9;Parent=Dca19544.1