Dca19928.1
Annotation
- 4-exons
- f-1
- sp|A5BXS4_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#ORFNames=VITISV_018267#unknown#0F0P0C
- AT5G14230.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 2 in Arabidopsis thaliana (TAIR:AT5G57740.1); Has 66374 Blast hits to 25358 proteins in 1201 species: Archae - 121; Bacteria - 8133; Metazoa - 29530; Fungi - 5885; Plants - 3349; Viruses - 785; Other Eukaryotes - 18571 (source: NCBI BLink). | chr5:4591883-4595775 FORWARD LENGTH=751
- Repeat List (scaffold205)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca19928.1 |
1 |
761 |
762 |
62.59 |
761 |
63 |
0
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|A5BXS4_VITVI |
69 |
821 |
829 |
90.83 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca19928.1 |
16 |
759 |
762 |
57.61 |
744 |
59 |
0
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT5G14230.1 |
2 |
740 |
751 |
98.4 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold205 |
Augustus |
mRNA |
172021 |
179963 |
. |
- |
. |
ID=Dca19928.1;Parent=Dca19928 |
| scaffold205 |
Augustus |
exon |
172021 |
173547 |
. |
- |
. |
ID=Dca19928.1.exon1;Parent=Dca19928.1 |
| scaffold205 |
Augustus |
exon |
174748 |
174885 |
. |
- |
. |
ID=Dca19928.1.exon2;Parent=Dca19928.1 |
| scaffold205 |
Augustus |
exon |
174996 |
175271 |
. |
- |
. |
ID=Dca19928.1.exon3;Parent=Dca19928.1 |
| scaffold205 |
Augustus |
exon |
179616 |
179963 |
. |
- |
. |
ID=Dca19928.1.exon4;Parent=Dca19928.1 |
