Dca20349.1
Annotation
- 2-exons
- f-1
- sp|Q10IL4_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os03g33850#GO:0003676#1F0P0C
- Repeat List (scaffold20849)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
Dca20349.1 |
1 |
380 |
412 |
47.08 |
380 |
47 |
1e-92
|
Target_name |
Start |
End |
Length |
Cov(%) |
sp|Q10IL4_ORYSJ |
1 |
400 |
562 |
71.17 |
AtOs (Arabidopsis thaliana & Oryza sativa)
Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
Dca20349.1 |
2 |
243 |
412 |
21.35 |
242 |
30 |
2e-23
|
Target_name |
Start |
End |
Length |
Cov(%) |
Os11t0656500-01 |
652 |
938 |
1401 |
20.48 |
Coding region
seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
scaffold20849 |
Augustus |
mRNA |
225 |
1726 |
. |
- |
. |
ID=Dca20349.1;Parent=Dca20349 |
scaffold20849 |
Augustus |
exon |
225 |
800 |
. |
- |
. |
ID=Dca20349.1.exon1;Parent=Dca20349.1 |
scaffold20849 |
Augustus |
exon |
1064 |
1726 |
. |
- |
. |
ID=Dca20349.1.exon2;Parent=Dca20349.1 |