Carnation DB

Dca20599.1

Annotation

12-exons
f-1
sp|B9I597_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_569530#GO:0005634;GO:0003676;GO:0008270#2F0P1C
AT5G06160.1 | Symbols: ATO | splicing factor-related | chr5:1862623-1866298 REVERSE LENGTH=504
Repeat List (scaffold21)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca20599.1	5	61	112	25.89	57	51	1e-06
Target_name	Start	End	Length	Cov(%)
sp\|D7SS71_VITVI	32	88	153	37.25

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca20599.1	1	509	509	71.51	509	72	0
Target_name	Start	End	Length	Cov(%)
AT5G06160.1	1	504	504	100

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold21	Augus-PASA	mRNA	734408	740402	.	+	.	ID=Dca20599.1;Parent=Dca20599
scaffold21	Augus-PASA	exon	734408	734581	.	+	.	ID=Dca20599.1.exon1;Parent=Dca20599.1
scaffold21	Augus-PASA	exon	734679	734792	.	+	.	ID=Dca20599.1.exon2;Parent=Dca20599.1
scaffold21	Augus-PASA	exon	736215	736319	.	+	.	ID=Dca20599.1.exon3;Parent=Dca20599.1
scaffold21	Augus-PASA	exon	736546	736688	.	+	.	ID=Dca20599.1.exon4;Parent=Dca20599.1
scaffold21	Augus-PASA	exon	736793	736889	.	+	.	ID=Dca20599.1.exon5;Parent=Dca20599.1
scaffold21	Augus-PASA	exon	737381	737542	.	+	.	ID=Dca20599.1.exon6;Parent=Dca20599.1
scaffold21	Augus-PASA	exon	738072	738143	.	+	.	ID=Dca20599.1.exon7;Parent=Dca20599.1
scaffold21	Augus-PASA	exon	738294	738455	.	+	.	ID=Dca20599.1.exon8;Parent=Dca20599.1
scaffold21	Augus-PASA	exon	738676	738753	.	+	.	ID=Dca20599.1.exon9;Parent=Dca20599.1
scaffold21	Augus-PASA	exon	738855	738983	.	+	.	ID=Dca20599.1.exon10;Parent=Dca20599.1
scaffold21	Augus-PASA	exon	739159	739305	.	+	.	ID=Dca20599.1.exon11;Parent=Dca20599.1
scaffold21	Augus-PASA	exon	740256	740402	.	+	.	ID=Dca20599.1.exon12;Parent=Dca20599.1