Carnation DB

Dca2079.1

Annotation

6-exons
f-535
sp|F2Z6M1_ARATH#Rhomboid family KOMPEITO#Arabidopsis thaliana (Mouse-ear cress)#Name=KOM#GO:0016021;GO:0004252;GO:0006508#1F1P1C
Repeat List (scaffold1069)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca2079.1	2	209	218	47.24	208	50	1e-58
Target_name	Start	End	Length	Cov(%)
sp\|F2Z6M1_ARATH	176	385	385	54.54

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca2079.1	2	173	218	39.9	172	50	1e-48
Target_name	Start	End	Length	Cov(%)
AT1G77860.1	176	349	351	49.57

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1069	Augustus	mRNA	12246	14637	.	+	.	ID=Dca2079.1;Parent=Dca2079
scaffold1069	Augustus	exon	12246	12568	.	+	.	ID=Dca2079.1.exon1;Parent=Dca2079.1
scaffold1069	Augustus	exon	13309	13472	.	+	.	ID=Dca2079.1.exon2;Parent=Dca2079.1
scaffold1069	Augustus	exon	13566	13729	.	+	.	ID=Dca2079.1.exon3;Parent=Dca2079.1
scaffold1069	Augustus	exon	13828	14090	.	+	.	ID=Dca2079.1.exon4;Parent=Dca2079.1
scaffold1069	Augustus	exon	14183	14309	.	+	.	ID=Dca2079.1.exon5;Parent=Dca2079.1
scaffold1069	Augustus	exon	14488	14637	.	+	.	ID=Dca2079.1.exon6;Parent=Dca2079.1