Carnation DB

Dca20880.1

Annotation

7-exons
f-1
sp|A9PE89_POPTR#Putative uncharacterized protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#unknown#unknown#0F0P0C
AT3G07950.1 | Symbols: | rhomboid protein-related | chr3:2531982-2534277 FORWARD LENGTH=304
Repeat List (scaffold212)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca20880.1	2	297	297	68.68	296	69	2e-118
Target_name	Start	End	Length	Cov(%)
sp\|A9PE89_POPTR	14	303	303	95.7

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca20880.1	2	297	297	66.32	296	67	1e-111
Target_name	Start	End	Length	Cov(%)
AT3G07950.1	10	304	304	97.03

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold212	Augustus	mRNA	80387	85036	.	-	.	ID=Dca20880.1;Parent=Dca20880
scaffold212	Augustus	exon	80387	80486	.	-	.	ID=Dca20880.1.exon1;Parent=Dca20880.1
scaffold212	Augustus	exon	80958	81095	.	-	.	ID=Dca20880.1.exon2;Parent=Dca20880.1
scaffold212	Augus-PASA	exon	81178	81380	.	-	.	ID=Dca20880.1.exon3;Parent=Dca20880.1
scaffold212	Augus-PASA	exon	81464	81575	.	-	.	ID=Dca20880.1.exon4;Parent=Dca20880.1
scaffold212	Augus-PASA	exon	82570	82736	.	-	.	ID=Dca20880.1.exon5;Parent=Dca20880.1
scaffold212	Augus-PASA	exon	82857	82917	.	-	.	ID=Dca20880.1.exon6;Parent=Dca20880.1
scaffold212	Augustus	exon	84924	85036	.	-	.	ID=Dca20880.1.exon7;Parent=Dca20880.1