Carnation DB

Dca21077.1

Annotation

5-exons
f-1
sp|A5AMR9_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#ORFNames=VITISV_012014#GO:0005576;GO:0004650;GO:0005975;GO:0007047#1F2P1C
Os01t0517500-01 Similar to Polygalacturonase (Fragment).
Repeat List (scaffold2137)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca21077.1	40	399	401	30.67	360	34	9e-46
Target_name	Start	End	Length	Cov(%)
sp\|A5AMR9_VITVI	483	835	863	40.9

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca21077.1	1	399	401	32.41	399	33	1e-50
Target_name	Start	End	Length	Cov(%)
Os01t0517500-01	1	379	408	92.89

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold2137	Augus-PASA	mRNA	11306	13844	.	-	.	ID=Dca21077.1;Parent=Dca21077
scaffold2137	Augus-PASA	exon	11306	11452	.	-	.	ID=Dca21077.1.exon1;Parent=Dca21077.1
scaffold2137	Augus-PASA	exon	11655	11889	.	-	.	ID=Dca21077.1.exon2;Parent=Dca21077.1
scaffold2137	Augus-PASA	exon	12218	12513	.	-	.	ID=Dca21077.1.exon3;Parent=Dca21077.1
scaffold2137	Augus-PASA	exon	12937	13248	.	-	.	ID=Dca21077.1.exon4;Parent=Dca21077.1
scaffold2137	Augustus	exon	13629	13844	.	-	.	ID=Dca21077.1.exon5;Parent=Dca21077.1