Carnation DB

Dca22258.1

Annotation

7-exons
f-1
sp|Q9ZUF0_ARATH#Putative non-LTR retroelement reverse transcriptase#Arabidopsis thaliana (Mouse-ear cress)#Name=At2g05980#GO:0003723;GO:0003964;GO:0006278#2F1P0C
Repeat List (scaffold2233)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

No data

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca22258.1	364	517	788	7.1	154	37	3e-25
Target_name	Start	End	Length	Cov(%)
Os06t0484800-00	351	505	857	18.08

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold2233	Augustus	mRNA	43729	48583	.	+	.	ID=Dca22258.1;Parent=Dca22258
scaffold2233	Augustus	exon	43729	43975	.	+	.	ID=Dca22258.1.exon1;Parent=Dca22258.1
scaffold2233	Augustus	exon	44133	44242	.	+	.	ID=Dca22258.1.exon2;Parent=Dca22258.1
scaffold2233	Augustus	exon	44615	45073	.	+	.	ID=Dca22258.1.exon3;Parent=Dca22258.1
scaffold2233	Augustus	exon	45145	45336	.	+	.	ID=Dca22258.1.exon4;Parent=Dca22258.1
scaffold2233	Augustus	exon	45633	46196	.	+	.	ID=Dca22258.1.exon5;Parent=Dca22258.1
scaffold2233	Augustus	exon	47561	47974	.	+	.	ID=Dca22258.1.exon6;Parent=Dca22258.1
scaffold2233	Augustus	exon	48203	48583	.	+	.	ID=Dca22258.1.exon7;Parent=Dca22258.1