Carnation DB

Dca2243.1

Annotation

7-exons
f-1
sp|F6HL27_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_08s0007g01250#unknown#0F0P0C
AT5G22790.1 | Symbols: RER1 | reticulata-related 1 | chr5:7599395-7601573 REVERSE LENGTH=433
Repeat List (scaffold1075)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca2243.1	119	410	410	54.39	292	77	1e-134
Target_name	Start	End	Length	Cov(%)
sp\|F6HL27_VITVI	82	373	373	78.28

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca2243.1	115	410	410	52.43	296	73	6e-130
Target_name	Start	End	Length	Cov(%)
AT5G22790.1	137	433	433	68.59

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1075	Augus-PASA	mRNA	48601	52933	.	-	.	ID=Dca2243.1;Parent=Dca2243
scaffold1075	Augus-PASA	exon	48601	48794	.	-	.	ID=Dca2243.1.exon1;Parent=Dca2243.1
scaffold1075	Augus-PASA	exon	49335	49399	.	-	.	ID=Dca2243.1.exon2;Parent=Dca2243.1
scaffold1075	Augus-PASA	exon	50232	50311	.	-	.	ID=Dca2243.1.exon3;Parent=Dca2243.1
scaffold1075	Augus-PASA	exon	50415	50484	.	-	.	ID=Dca2243.1.exon4;Parent=Dca2243.1
scaffold1075	Augustus	exon	50889	51109	.	-	.	ID=Dca2243.1.exon5;Parent=Dca2243.1
scaffold1075	Augustus	exon	51454	51552	.	-	.	ID=Dca2243.1.exon6;Parent=Dca2243.1
scaffold1075	Augustus	exon	52430	52933	.	-	.	ID=Dca2243.1.exon7;Parent=Dca2243.1