Dca23672.1
Annotation
- 3-exons
- f-1
- sp|Q2QUJ5_ORYSJ#Retrotransposon protein, putative, Ty3-gypsy subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g16050#GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006278#3F2P0C
- Repeat List (scaffold2364)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca23672.1 |
45 |
707 |
707 |
44.97 |
663 |
45 |
2e-165
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QUJ5_ORYSJ |
56 |
733 |
1325 |
51.16 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca23672.1 |
313 |
707 |
707 |
22.77 |
395 |
41 |
3e-88
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os12t0142900-02 |
125 |
523 |
707 |
56.43 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold2364 |
Augustus |
mRNA |
7410 |
9895 |
. |
- |
. |
ID=Dca23672.1;Parent=Dca23672 |
| scaffold2364 |
Augustus |
exon |
7410 |
8605 |
. |
- |
. |
ID=Dca23672.1.exon1;Parent=Dca23672.1 |
| scaffold2364 |
Augustus |
exon |
8819 |
9118 |
. |
- |
. |
ID=Dca23672.1.exon2;Parent=Dca23672.1 |
| scaffold2364 |
Augustus |
exon |
9268 |
9895 |
. |
- |
. |
ID=Dca23672.1.exon3;Parent=Dca23672.1 |
