Dca23945.1
Annotation
- 4-exons
- f-1
- sp|Q2R2I1_ORYSJ#Retrotransposon protein, putative, unclassified#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os11g35740#unknown#0F0P0C
- Repeat List (scaffold239)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca23945.1 |
1 |
65 |
356 |
8.7 |
65 |
45 |
2e-07
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2R2I1_ORYSJ |
570 |
639 |
1064 |
6.57 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca23945.1 |
84 |
200 |
356 |
17.13 |
117 |
52 |
5e-25
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| ATMG00810.1 |
2 |
117 |
240 |
48.33 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold239 |
Augustus |
mRNA |
190338 |
192697 |
. |
+ |
. |
ID=Dca23945.1;Parent=Dca23945 |
| scaffold239 |
Augustus |
exon |
190338 |
190536 |
. |
+ |
. |
ID=Dca23945.1.exon1;Parent=Dca23945.1 |
| scaffold239 |
Augustus |
exon |
190899 |
191319 |
. |
+ |
. |
ID=Dca23945.1.exon2;Parent=Dca23945.1 |
| scaffold239 |
Augustus |
exon |
191567 |
191786 |
. |
+ |
. |
ID=Dca23945.1.exon3;Parent=Dca23945.1 |
| scaffold239 |
Augustus |
exon |
192467 |
192697 |
. |
+ |
. |
ID=Dca23945.1.exon4;Parent=Dca23945.1 |
