Carnation DB

Dca2474.1

Annotation

7-exons
f-1
sp|A9PET0_POPTR#Putative uncharacterized protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#unknown#GO:0016021;GO:0005886;GO:0009306#0F1P2C
AT5G52440.1 | Symbols: HCF106 | Bacterial sec-independent translocation protein mttA/Hcf106 | chr5:21286896-21288613 FORWARD LENGTH=260
Repeat List (scaffold1085)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca2474.1	3	257	301	45.51	255	53	6e-60
Target_name	Start	End	Length	Cov(%)
sp\|A9PET0_POPTR	10	257	259	95.75

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca2474.1	25	248	301	40.53	224	54	5e-52
Target_name	Start	End	Length	Cov(%)
AT5G52440.1	19	239	260	85

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1085	Augus-PASA	mRNA	15106	17973	.	+	.	ID=Dca2474.1;Parent=Dca2474
scaffold1085	Augus-PASA	exon	15106	15337	.	+	.	ID=Dca2474.1.exon1;Parent=Dca2474.1
scaffold1085	Augus-PASA	exon	15653	15774	.	+	.	ID=Dca2474.1.exon2;Parent=Dca2474.1
scaffold1085	Augus-PASA	exon	16550	16609	.	+	.	ID=Dca2474.1.exon3;Parent=Dca2474.1
scaffold1085	Augustus	exon	16688	16844	.	+	.	ID=Dca2474.1.exon4;Parent=Dca2474.1
scaffold1085	Augustus	exon	17466	17672	.	+	.	ID=Dca2474.1.exon5;Parent=Dca2474.1
scaffold1085	Augustus	exon	17748	17813	.	+	.	ID=Dca2474.1.exon6;Parent=Dca2474.1
scaffold1085	Augustus	exon	17912	17973	.	+	.	ID=Dca2474.1.exon7;Parent=Dca2474.1