Dca2501.1
Annotation
- 2-exons
- f-1
- sp|Q2QSG2_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g24220#GO:0003676;GO:0015074#1F1P0C
- Repeat List (scaffold1086)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca2501.1 |
266 |
352 |
352 |
16.47 |
87 |
67 |
2e-26
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QSG2_ORYSJ |
1511 |
1597 |
1597 |
5.44 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca2501.1 |
269 |
342 |
352 |
7.95 |
74 |
38 |
4e-07
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
1347 |
1420 |
1428 |
5.18 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold1086 |
Augustus |
mRNA |
71122 |
73008 |
. |
+ |
. |
ID=Dca2501.1;Parent=Dca2501 |
| scaffold1086 |
Augustus |
exon |
71122 |
71916 |
. |
+ |
. |
ID=Dca2501.1.exon1;Parent=Dca2501.1 |
| scaffold1086 |
Augustus |
exon |
72745 |
73008 |
. |
+ |
. |
ID=Dca2501.1.exon2;Parent=Dca2501.1 |
