Carnation DB

Dca25208.1

Annotation

7-exons
f-1
sp|F6HAX3_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_05s0094g00470#GO:0008270#1F0P0C
sp|B9SX71_RICCO#Membrane associated ring finger 1,8, putative#Ricinus communis (Castor bean)#ORFNames=RCOM_0548760#GO:0008270#1F0P0C
Repeat List (scaffold250)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca25208.1	1	261	261	55.93	261	56	1e-75
Target_name	Start	End	Length	Cov(%)
sp\|F6HAX3_VITVI	1	249	249	100

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca25208.1	76	260	261	36.78	185	52	1e-49
Target_name	Start	End	Length	Cov(%)
Os01t0894600-01	37	218	220	82.72

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold250	Augus-PASA	mRNA	107574	110481	.	+	.	ID=Dca25208.1;Parent=Dca25208
scaffold250	Augus-PASA	exon	107574	107885	.	+	.	ID=Dca25208.1.exon1;Parent=Dca25208.1
scaffold250	Augus-PASA	exon	109430	109501	.	+	.	ID=Dca25208.1.exon2;Parent=Dca25208.1
scaffold250	Augus-PASA	exon	109612	109679	.	+	.	ID=Dca25208.1.exon3;Parent=Dca25208.1
scaffold250	Augus-PASA	exon	109813	109960	.	+	.	ID=Dca25208.1.exon4;Parent=Dca25208.1
scaffold250	Augus-PASA	exon	110053	110136	.	+	.	ID=Dca25208.1.exon5;Parent=Dca25208.1
scaffold250	Augus-PASA	exon	110280	110375	.	+	.	ID=Dca25208.1.exon6;Parent=Dca25208.1
scaffold250	Augus-PASA	exon	110476	110481	.	+	.	ID=Dca25208.1.exon7;Parent=Dca25208.1