Carnation DB

Dca27517.1

Annotation

5-exons
f-1
sp|B9HG41_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_1082745#GO:0005488#1F0P0C
AT4G39470.1 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:18359735-18361165 REVERSE LENGTH=341
Repeat List (scaffold274)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca27517.1	20	242	245	65.71	223	73	5e-92
Target_name	Start	End	Length	Cov(%)
sp\|B9HG41_POPTR	120	342	345	64.63

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca27517.1	20	242	245	56.32	223	62	1e-81
Target_name	Start	End	Length	Cov(%)
AT4G39470.1	117	338	341	65.1

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold274	Augus-PASA	mRNA	159723	162153	.	-	.	ID=Dca27517.1;Parent=Dca27517
scaffold274	Augus-PASA	exon	159723	159908	.	-	.	ID=Dca27517.1.exon1;Parent=Dca27517.1
scaffold274	Augus-PASA	exon	160190	160270	.	-	.	ID=Dca27517.1.exon2;Parent=Dca27517.1
scaffold274	Augus-PASA	exon	160676	160822	.	-	.	ID=Dca27517.1.exon3;Parent=Dca27517.1
scaffold274	Augus-PASA	exon	161717	161892	.	-	.	ID=Dca27517.1.exon4;Parent=Dca27517.1
scaffold274	Augus-PASA	exon	162006	162153	.	-	.	ID=Dca27517.1.exon5;Parent=Dca27517.1