Dca27569.1
Annotation
- 2-exons
- f-1
- sp|Q2R2I1_ORYSJ#Retrotransposon protein, putative, unclassified#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os11g35740#unknown#0F0P0C
- Repeat List (scaffold2746)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca27569.1 |
1 |
166 |
172 |
45.93 |
166 |
45 |
3e-29
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2R2I1_ORYSJ |
818 |
962 |
1064 |
13.62 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca27569.1 |
1 |
170 |
172 |
40.11 |
170 |
34 |
1e-18
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| ATMG00810.1 |
33 |
229 |
240 |
82.08 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold2746 |
Augustus |
mRNA |
13720 |
14319 |
. |
- |
. |
ID=Dca27569.1;Parent=Dca27569 |
| scaffold2746 |
Augustus |
exon |
13720 |
14018 |
. |
- |
. |
ID=Dca27569.1.exon1;Parent=Dca27569.1 |
| scaffold2746 |
Augustus |
exon |
14100 |
14319 |
. |
- |
. |
ID=Dca27569.1.exon2;Parent=Dca27569.1 |
