Carnation DB

Dca28320.1

Annotation

6-exons
f-1
sp|B9H4R7_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_558510#GO:0003676;GO:0000166#2F0P0C
AT5G65260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:26080501-26082984 REVERSE LENGTH=220
Repeat List (scaffold282)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca28320.1	8	203	203	72.9	196	76	3e-82
Target_name	Start	End	Length	Cov(%)
sp\|B9H4R7_POPTR	26	217	218	88.07

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca28320.1	24	203	203	66	180	75	2e-75
Target_name	Start	End	Length	Cov(%)
AT5G65260.1	41	219	220	81.36

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold282	Augus-PASA	mRNA	226128	230208	.	-	.	ID=Dca28320.1;Parent=Dca28320
scaffold282	Augus-PASA	exon	226128	226173	.	-	.	ID=Dca28320.1.exon1;Parent=Dca28320.1
scaffold282	Augus-PASA	exon	226257	226384	.	-	.	ID=Dca28320.1.exon2;Parent=Dca28320.1
scaffold282	Augus-PASA	exon	226494	226685	.	-	.	ID=Dca28320.1.exon3;Parent=Dca28320.1
scaffold282	Augustus	exon	228125	228195	.	-	.	ID=Dca28320.1.exon4;Parent=Dca28320.1
scaffold282	Augustus	exon	229860	229962	.	-	.	ID=Dca28320.1.exon5;Parent=Dca28320.1
scaffold282	Augustus	exon	230137	230208	.	-	.	ID=Dca28320.1.exon6;Parent=Dca28320.1