Carnation DB

Dca28502.1

Annotation

6-exons
f-1
sp|E0CRS4_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_18s0001g07090#unknown#0F0P0C
AT4G24380.1 | Symbols: | INVOLVED IN: 10-formyltetrahydrofolate biosynthetic process, folic acid and derivative biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G65400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:12612554-12613586 FORWARD LENGTH=234
Repeat List (scaffold284)

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca28502.1	1	223	244	64.34	223	71	1e-91
Target_name	Start	End	Length	Cov(%)
sp\|E0CRS4_VITVI	1	224	226	99.11

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca28502.1	1	232	244	60.65	232	64	7e-90
Target_name	Start	End	Length	Cov(%)
AT4G24380.1	1	233	234	99.57

seqname	source	feature	start	end	score	strand	frame	group
scaffold284	Augus-PASA	mRNA	187519	191157	.	-	.	ID=Dca28502.1;Parent=Dca28502
scaffold284	Augus-PASA	exon	187519	187658	.	-	.	ID=Dca28502.1.exon1;Parent=Dca28502.1
scaffold284	Augus-PASA	exon	187753	187854	.	-	.	ID=Dca28502.1.exon2;Parent=Dca28502.1
scaffold284	Augus-PASA	exon	188586	188712	.	-	.	ID=Dca28502.1.exon3;Parent=Dca28502.1
scaffold284	Augus-PASA	exon	189081	189122	.	-	.	ID=Dca28502.1.exon4;Parent=Dca28502.1
scaffold284	Augus-PASA	exon	189349	189447	.	-	.	ID=Dca28502.1.exon5;Parent=Dca28502.1
scaffold284	Augus-PASA	exon	190933	191157	.	-	.	ID=Dca28502.1.exon6;Parent=Dca28502.1