Dca30044.1
Annotation
- 3-exons
- f-1
- sp|B9SMC9_RICCO#Putative uncharacterized protein#Ricinus communis (Castor bean)#ORFNames=RCOM_0512630#unknown#0F0P0C
- AT4G38280.1 | Symbols: | BEST Arabidopsis thaliana protein match is: Integral membrane protein hemolysin-III homolog (TAIR:AT2G45250.1); Has 65 Blast hits to 65 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:17942034-17942864 FORWARD LENGTH=170
- Repeat List (scaffold3)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca30044.1 |
1 |
286 |
293 |
45.05 |
286 |
45 |
1e-50
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|B9SMC9_RICCO |
1 |
289 |
297 |
97.3 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca30044.1 |
206 |
281 |
293 |
15.35 |
76 |
60 |
3e-22
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT4G38280.1 |
88 |
163 |
170 |
44.7 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold3 |
Augustus |
mRNA |
731987 |
733228 |
. |
- |
. |
ID=Dca30044.1;Parent=Dca30044 |
| scaffold3 |
Augustus |
exon |
731987 |
732081 |
. |
- |
. |
ID=Dca30044.1.exon1;Parent=Dca30044.1 |
| scaffold3 |
Augustus |
exon |
732353 |
732436 |
. |
- |
. |
ID=Dca30044.1.exon2;Parent=Dca30044.1 |
| scaffold3 |
Augustus |
exon |
732526 |
733228 |
. |
- |
. |
ID=Dca30044.1.exon3;Parent=Dca30044.1 |
