Carnation DB

Dca30316.1

Annotation

5-exons
f-1
sp|B9ILZ8_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_825896#GO:0016020;GO:0048193#0F1P1C
AT4G30240.1 | Symbols: | Syntaxin/t-SNARE family protein | chr4:14808359-14809745 REVERSE LENGTH=300
Repeat List (scaffold3023)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca30316.1	1	271	329	37.68	271	46	2e-57
Target_name	Start	End	Length	Cov(%)
sp\|B9ILZ8_POPTR	1	246	271	90.77

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca30316.1	1	290	329	37.08	290	42	2e-50
Target_name	Start	End	Length	Cov(%)
AT4G30240.1	1	265	300	88.33

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold3023	Augus-PASA	mRNA	28882	31132	.	+	.	ID=Dca30316.1;Parent=Dca30316
scaffold3023	Augus-PASA	exon	28882	28964	.	+	.	ID=Dca30316.1.exon1;Parent=Dca30316.1
scaffold3023	Augus-PASA	exon	29592	29706	.	+	.	ID=Dca30316.1.exon2;Parent=Dca30316.1
scaffold3023	Augus-PASA	exon	29815	30474	.	+	.	ID=Dca30316.1.exon3;Parent=Dca30316.1
scaffold3023	Augus-PASA	exon	30874	30985	.	+	.	ID=Dca30316.1.exon4;Parent=Dca30316.1
scaffold3023	Augustus	exon	31113	31132	.	+	.	ID=Dca30316.1.exon5;Parent=Dca30316.1