Dca30649.1
Annotation
- 2-exons
- f-1
- sp|Q7XDW3_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os10g31220#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold307)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca30649.1 |
8 |
421 |
433 |
51.27 |
414 |
52 |
2e-124
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q7XDW3_ORYSJ |
885 |
1293 |
1361 |
30.05 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca30649.1 |
335 |
432 |
433 |
7.85 |
98 |
35 |
6e-10
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os11t0656500-01 |
1244 |
1339 |
1401 |
6.85 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold307 |
Augustus |
mRNA |
17878 |
19428 |
. |
+ |
. |
ID=Dca30649.1;Parent=Dca30649 |
| scaffold307 |
Augustus |
exon |
17878 |
18877 |
. |
+ |
. |
ID=Dca30649.1.exon1;Parent=Dca30649.1 |
| scaffold307 |
Augustus |
exon |
19127 |
19428 |
. |
+ |
. |
ID=Dca30649.1.exon2;Parent=Dca30649.1 |
