Dca3099.1
Annotation
- 2-exons
- f-1
- sp|A5BP26_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#ORFNames=VITISV_034590#GO:0003676;GO:0008270#2F0P0C
- AT1G21280.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7447690-7448403 REVERSE LENGTH=237
- Repeat List (scaffold111)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca3099.1 |
14 |
369 |
380 |
38.42 |
356 |
40 |
2e-69
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|A5BP26_VITVI |
15 |
361 |
970 |
35.77 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca3099.1 |
23 |
230 |
380 |
18.94 |
208 |
34 |
4e-33
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT1G21280.1 |
14 |
229 |
237 |
91.13 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold111 |
Augustus |
mRNA |
22438 |
23894 |
. |
+ |
. |
ID=Dca3099.1;Parent=Dca3099 |
| scaffold111 |
Augustus |
exon |
22438 |
23539 |
. |
+ |
. |
ID=Dca3099.1.exon1;Parent=Dca3099.1 |
| scaffold111 |
Augustus |
exon |
23854 |
23894 |
. |
+ |
. |
ID=Dca3099.1.exon2;Parent=Dca3099.1 |
