Dca31066.1
Annotation
- 4-exons
- f-1
- sp|Q2QUJ4_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g16060#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold312)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca31066.1 |
14 |
771 |
781 |
44.81 |
758 |
41 |
5e-167
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QUJ4_ORYSJ |
108 |
882 |
1050 |
73.8 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca31066.1 |
339 |
478 |
781 |
7.68 |
140 |
40 |
3e-21
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
646 |
797 |
1428 |
10.64 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold312 |
Augustus |
mRNA |
8089 |
11448 |
. |
- |
. |
ID=Dca31066.1;Parent=Dca31066 |
| scaffold312 |
Augustus |
exon |
8089 |
8816 |
. |
- |
. |
ID=Dca31066.1.exon1;Parent=Dca31066.1 |
| scaffold312 |
Augustus |
exon |
8952 |
9271 |
. |
- |
. |
ID=Dca31066.1.exon2;Parent=Dca31066.1 |
| scaffold312 |
Augustus |
exon |
9505 |
9786 |
. |
- |
. |
ID=Dca31066.1.exon3;Parent=Dca31066.1 |
| scaffold312 |
Augustus |
exon |
10433 |
11448 |
. |
- |
. |
ID=Dca31066.1.exon4;Parent=Dca31066.1 |
