Dca32487.1
Annotation
- 3-exons
- f-1
- sp|Q10HF0_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os03g39400#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold3297)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca32487.1 |
61 |
145 |
434 |
9.67 |
85 |
47 |
3e-14
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q10HF0_ORYSJ |
354 |
439 |
1073 |
8.01 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca32487.1 |
221 |
431 |
434 |
20.96 |
211 |
44 |
5e-46
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
889 |
1090 |
1428 |
14.14 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold3297 |
Augustus |
mRNA |
51620 |
53924 |
. |
+ |
. |
ID=Dca32487.1;Parent=Dca32487 |
| scaffold3297 |
Augustus |
exon |
51620 |
52053 |
. |
+ |
. |
ID=Dca32487.1.exon1;Parent=Dca32487.1 |
| scaffold3297 |
Augustus |
exon |
52590 |
52723 |
. |
+ |
. |
ID=Dca32487.1.exon2;Parent=Dca32487.1 |
| scaffold3297 |
Augustus |
exon |
53188 |
53924 |
. |
+ |
. |
ID=Dca32487.1.exon3;Parent=Dca32487.1 |
