Dca33461.1
Annotation
- 3-exons
- f-1
- sp|B1N668_SOLLC#Copia LTR rider#Solanum lycopersicum (Tomato) (Lycopersicon esculentum)#ORFNames=LYC_68t000004, SUNLYC_67t000007#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold3417)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca33461.1 |
1 |
192 |
395 |
28.86 |
192 |
46 |
2e-45
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|B1N668_SOLLC |
1 |
226 |
1307 |
17.29 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca33461.1 |
258 |
375 |
395 |
13.67 |
118 |
46 |
4e-24
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| ATMG00300.1 |
27 |
141 |
145 |
79.31 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold3417 |
Augustus |
mRNA |
3994 |
5448 |
. |
- |
. |
ID=Dca33461.1;Parent=Dca33461 |
| scaffold3417 |
Augustus |
exon |
3994 |
4602 |
. |
- |
. |
ID=Dca33461.1.exon1;Parent=Dca33461.1 |
| scaffold3417 |
Augustus |
exon |
4730 |
5052 |
. |
- |
. |
ID=Dca33461.1.exon2;Parent=Dca33461.1 |
| scaffold3417 |
Augustus |
exon |
5193 |
5448 |
. |
- |
. |
ID=Dca33461.1.exon3;Parent=Dca33461.1 |
