Carnation DB

Dca3356.1

Annotation

5-exons
f-1
sp|A9NV66_PICSI#Putative uncharacterized protein#Picea sitchensis (Sitka spruce) (Pinus sitchensis)#unknown#GO:0005840;GO:0003735;GO:0006412#1F1P1C
Os12t0406200-01 Similar to 40S ribosomal protein S3a (CYC07 protein).
Repeat List (scaffold11197)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca3356.1	1	164	169	90.53	164	94	2e-80
Target_name	Start	End	Length	Cov(%)
sp\|A9NV66_PICSI	1	164	165	99.39

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca3356.1	1	164	169	85.79	164	89	2e-79
Target_name	Start	End	Length	Cov(%)
Os12t0406200-01	1	164	261	62.83

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold11197	Augustus	mRNA	22335	23833	.	-	.	ID=Dca3356.1;Parent=Dca3356
scaffold11197	Augustus	exon	22335	22541	.	-	.	ID=Dca3356.1.exon1;Parent=Dca3356.1
scaffold11197	Augustus	exon	22630	22767	.	-	.	ID=Dca3356.1.exon2;Parent=Dca3356.1
scaffold11197	Augustus	exon	23449	23554	.	-	.	ID=Dca3356.1.exon3;Parent=Dca3356.1
scaffold11197	Augustus	exon	23658	23705	.	-	.	ID=Dca3356.1.exon4;Parent=Dca3356.1
scaffold11197	Augustus	exon	23823	23833	.	-	.	ID=Dca3356.1.exon5;Parent=Dca3356.1