Dca33760.1
Annotation
- 3-exons
- f-1
- sp|Q2R1L3_ORYSJ#Retrotransposon protein, putative, Ty3-gypsy subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os11g38820#GO:0004190;GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006508;GO:0006278#4F3P0C
- Repeat List (scaffold3457)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca33760.1 |
25 |
627 |
627 |
40.51 |
603 |
38 |
9e-111
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2R1L3_ORYSJ |
410 |
1079 |
1710 |
39.18 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca33760.1 |
337 |
627 |
627 |
17.7 |
291 |
32 |
2e-41
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os04t0191000-01 |
414 |
760 |
1539 |
22.54 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold3457 |
Augustus |
mRNA |
24672 |
26801 |
. |
+ |
. |
ID=Dca33760.1;Parent=Dca33760 |
| scaffold3457 |
Augustus |
exon |
24672 |
26000 |
. |
+ |
. |
ID=Dca33760.1.exon1;Parent=Dca33760.1 |
| scaffold3457 |
Augustus |
exon |
26139 |
26459 |
. |
+ |
. |
ID=Dca33760.1.exon2;Parent=Dca33760.1 |
| scaffold3457 |
Augustus |
exon |
26568 |
26801 |
. |
+ |
. |
ID=Dca33760.1.exon3;Parent=Dca33760.1 |
