Dca34215.1
Annotation
- 3-exons
- f-1
- sp|O81506_ARATH#Putative retrotransposon protein#Arabidopsis thaliana (Mouse-ear cress)#Name=T7M24.7#GO:0003676;GO:0015074#1F1P0C
- Repeat List (scaffold3517)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca34215.1 |
1 |
166 |
371 |
22.64 |
166 |
50 |
3e-39
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|O81506_ARATH |
254 |
424 |
964 |
17.73 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca34215.1 |
1 |
109 |
371 |
11.05 |
109 |
37 |
5e-12
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
668 |
779 |
1428 |
7.84 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold3517 |
Augustus |
mRNA |
26617 |
32628 |
. |
- |
. |
ID=Dca34215.1;Parent=Dca34215 |
| scaffold3517 |
Augustus |
exon |
26617 |
27188 |
. |
- |
. |
ID=Dca34215.1.exon1;Parent=Dca34215.1 |
| scaffold3517 |
Augustus |
exon |
31889 |
31930 |
. |
- |
. |
ID=Dca34215.1.exon2;Parent=Dca34215.1 |
| scaffold3517 |
Augustus |
exon |
32127 |
32628 |
. |
- |
. |
ID=Dca34215.1.exon3;Parent=Dca34215.1 |
