Carnation DB

Dca34506.1

Annotation

4-exons
f-1
sp|C5XFG8_SORBI#Putative uncharacterized protein Sb03g043050#Sorghum bicolor (Sorghum) (Sorghum vulgare)#Name=Sb03g043050#unknown#0F0P0C
AT3G27340.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: oxidation reduction; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Gamma-butyrobetaine dioxygenase/Trimethyllysine dioxygenase, N-terminal (InterPro:IPR010376); Has 1035 Blast hits to 1035 proteins in 399 species: Archae - 0; Bacteria - 765; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 231 (source: NCBI BLink). | chr3:10121303-10122692 FORWARD LENGTH=141
Repeat List (scaffold3560)

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca34506.1	10	135	136	71.32	126	77	2e-53
Target_name	Start	End	Length	Cov(%)
sp\|C5XFG8_SORBI	11	136	138	91.3

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca34506.1	13	135	136	67.64	123	75	4e-51
Target_name	Start	End	Length	Cov(%)
Os02t0197800-01	17	139	142	86.61

seqname	source	feature	start	end	score	strand	frame	group
scaffold3560	Augus-PASA	mRNA	27138	29087	.	-	.	ID=Dca34506.1;Parent=Dca34506
scaffold3560	Augus-PASA	exon	27138	27282	.	-	.	ID=Dca34506.1.exon1;Parent=Dca34506.1
scaffold3560	Augus-PASA	exon	27356	27420	.	-	.	ID=Dca34506.1.exon2;Parent=Dca34506.1
scaffold3560	Augus-PASA	exon	27630	27737	.	-	.	ID=Dca34506.1.exon3;Parent=Dca34506.1
scaffold3560	Augus-PASA	exon	28995	29087	.	-	.	ID=Dca34506.1.exon4;Parent=Dca34506.1
scaffold3560	Augus-PASA	mRNA	27138	29087	.	-	.	ID=Dca34506.2;Parent=Dca34506
scaffold3560	Augus-PASA	exon	27138	27282	.	-	.	ID=Dca34506.2.exon1;Parent=Dca34506.2
scaffold3560	Augus-PASA	exon	27356	27420	.	-	.	ID=Dca34506.2.exon2;Parent=Dca34506.2
scaffold3560	Augus-PASA	exon	27630	27737	.	-	.	ID=Dca34506.2.exon3;Parent=Dca34506.2
scaffold3560	Augustus	exon	28846	28887	.	-	.	ID=Dca34506.2.exon4;Parent=Dca34506.2
scaffold3560	Augus-PASA	exon	28995	29087	.	-	.	ID=Dca34506.2.exon5;Parent=Dca34506.2