Dca34927.1
Annotation
- 4-exons
- f-1
- sp|Q2AA50_ASPOF#Retrotransposon gag protein#Asparagus officinalis (Garden asparagus)#ORFNames=19.t00014#GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006278#3F2P0C
- Repeat List (scaffold3609)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca34927.1 |
147 |
218 |
782 |
3.96 |
72 |
44 |
1e-11
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2AA50_ASPOF |
6 |
77 |
1788 |
4.02 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca34927.1 |
455 |
766 |
782 |
13.29 |
312 |
34 |
3e-50
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os12t0142900-02 |
247 |
539 |
707 |
41.44 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold3609 |
Augustus |
mRNA |
14883 |
18317 |
. |
+ |
. |
ID=Dca34927.1;Parent=Dca34927 |
| scaffold3609 |
Augustus |
exon |
14883 |
15537 |
. |
+ |
. |
ID=Dca34927.1.exon1;Parent=Dca34927.1 |
| scaffold3609 |
Augustus |
exon |
16436 |
16908 |
. |
+ |
. |
ID=Dca34927.1.exon2;Parent=Dca34927.1 |
| scaffold3609 |
Augustus |
exon |
16992 |
17217 |
. |
+ |
. |
ID=Dca34927.1.exon3;Parent=Dca34927.1 |
| scaffold3609 |
Augustus |
exon |
17323 |
18317 |
. |
+ |
. |
ID=Dca34927.1.exon4;Parent=Dca34927.1 |
