Carnation DB

Dca35018.1

Annotation

5-exons
f-1
sp|Q9ZT94_ARATH#Putative polyprotein of LTR transposon#Arabidopsis thaliana (Mouse-ear cress)#Name=T4I9.16#GO:0003676;GO:0008270;GO:0015074#2F1P0C
Repeat List (scaffold362)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca35018.1	1	62	80	47.5	62	62	2e-17
Target_name	Start	End	Length	Cov(%)
sp\|A5AXM1_VITVI	500	561	569	10.89

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca35018.1	2	50	80	30	49	49	2e-08
Target_name	Start	End	Length	Cov(%)
Os11t0656500-01	1341	1389	1401	3.49

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold362	Augustus	mRNA	174867	179169	.	+	.	ID=Dca35018.1;Parent=Dca35018
scaffold362	Augustus	exon	174867	175416	.	+	.	ID=Dca35018.1.exon1;Parent=Dca35018.1
scaffold362	Augustus	exon	175518	175720	.	+	.	ID=Dca35018.1.exon2;Parent=Dca35018.1
scaffold362	Augustus	exon	176865	176914	.	+	.	ID=Dca35018.1.exon3;Parent=Dca35018.1
scaffold362	Augustus	exon	177008	177202	.	+	.	ID=Dca35018.1.exon4;Parent=Dca35018.1
scaffold362	Augustus	exon	178482	179169	.	+	.	ID=Dca35018.1.exon5;Parent=Dca35018.1