Carnation DB

Dca36078.1

Annotation

9-exons
f-1
sp|B9H236_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_647716#GO:0000166;GO:0016491;GO:0008270#3F0P0C
AT4G21580.1 | Symbols: | oxidoreductase, zinc-binding dehydrogenase family protein | chr4:11475822-11477514 FORWARD LENGTH=325
Repeat List (scaffold3783)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca36078.1	302	460	461	23.64	159	69	1e-59
Target_name	Start	End	Length	Cov(%)
sp\|B9H236_POPTR	166	324	325	48.92

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca36078.1	302	459	461	22.99	158	68	1e-56
Target_name	Start	End	Length	Cov(%)
AT4G21580.1	166	323	325	48.61

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold3783	Augus-PASA	mRNA	11907	15517	.	+	.	ID=Dca36078.1;Parent=Dca36078
scaffold3783	Augus-PASA	exon	11907	12170	.	+	.	ID=Dca36078.1.exon1;Parent=Dca36078.1
scaffold3783	Augus-PASA	exon	13459	13638	.	+	.	ID=Dca36078.1.exon2;Parent=Dca36078.1
scaffold3783	Augus-PASA	exon	13837	13918	.	+	.	ID=Dca36078.1.exon3;Parent=Dca36078.1
scaffold3783	Augus-PASA	exon	14004	14111	.	+	.	ID=Dca36078.1.exon4;Parent=Dca36078.1
scaffold3783	Augus-PASA	exon	14242	14400	.	+	.	ID=Dca36078.1.exon5;Parent=Dca36078.1
scaffold3783	Augustus	exon	14535	14693	.	+	.	ID=Dca36078.1.exon6;Parent=Dca36078.1
scaffold3783	Augustus	exon	14819	14896	.	+	.	ID=Dca36078.1.exon7;Parent=Dca36078.1
scaffold3783	Augustus	exon	15029	15187	.	+	.	ID=Dca36078.1.exon8;Parent=Dca36078.1
scaffold3783	Augus-PASA	exon	15321	15517	.	+	.	ID=Dca36078.1.exon9;Parent=Dca36078.1