Carnation DB

Dca3610.1

Annotation

9-exons
f-1
sp|B9GJJ0_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_753607#GO:0000166;GO:0016491#2F0P0C
sp|B9RAK5_RICCO#Short-chain dehydrogenase, putative#Ricinus communis (Castor bean)#ORFNames=RCOM_1506950#GO:0000166;GO:0016491#2F0P0C
Repeat List (scaffold113)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca3610.1	1	344	351	55.55	344	57	4e-105
Target_name	Start	End	Length	Cov(%)
sp\|B9GJJ0_POPTR	1	342	349	97.99

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca3610.1	1	345	351	51.56	345	53	1e-94
Target_name	Start	End	Length	Cov(%)
AT5G04070.1	19	358	359	94.7

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold113	Augustus	mRNA	54719	57640	.	+	.	ID=Dca3610.1;Parent=Dca3610
scaffold113	Augustus	exon	54719	54868	.	+	.	ID=Dca3610.1.exon1;Parent=Dca3610.1
scaffold113	Augustus	exon	54991	55057	.	+	.	ID=Dca3610.1.exon2;Parent=Dca3610.1
scaffold113	Augustus	exon	55281	55309	.	+	.	ID=Dca3610.1.exon3;Parent=Dca3610.1
scaffold113	Augustus	exon	55430	55638	.	+	.	ID=Dca3610.1.exon4;Parent=Dca3610.1
scaffold113	Augus-PASA	exon	55880	55998	.	+	.	ID=Dca3610.1.exon5;Parent=Dca3610.1
scaffold113	Augus-PASA	exon	56544	56639	.	+	.	ID=Dca3610.1.exon6;Parent=Dca3610.1
scaffold113	Augus-PASA	exon	56727	56802	.	+	.	ID=Dca3610.1.exon7;Parent=Dca3610.1
scaffold113	Augus-PASA	exon	57087	57240	.	+	.	ID=Dca3610.1.exon8;Parent=Dca3610.1
scaffold113	Augus-PASA	exon	57485	57640	.	+	.	ID=Dca3610.1.exon9;Parent=Dca3610.1