Dca37378.1
Annotation
- 2-exons
- f-1
- sp|Q10KH1_ORYSJ#Retrotransposon protein, putative, Ty3-gypsy subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os03g26750#GO:0003779;GO:0004190;GO:0003723;GO:0003964;GO:0008270;GO:0007010;GO:0015074;GO:0006508;GO:0006278#5F4P0C
- Repeat List (scaffold398)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca37378.1 |
7 |
235 |
235 |
44.68 |
229 |
46 |
9e-53
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q10KH1_ORYSJ |
573 |
793 |
1357 |
16.28 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca37378.1 |
110 |
235 |
235 |
22.12 |
126 |
42 |
1e-22
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os12t0142900-02 |
215 |
339 |
707 |
17.68 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold398 |
Augustus |
mRNA |
164863 |
165776 |
. |
+ |
. |
ID=Dca37378.1;Parent=Dca37378 |
| scaffold398 |
Augustus |
exon |
164863 |
165199 |
. |
+ |
. |
ID=Dca37378.1.exon1;Parent=Dca37378.1 |
| scaffold398 |
Augustus |
exon |
165406 |
165776 |
. |
+ |
. |
ID=Dca37378.1.exon2;Parent=Dca37378.1 |
