Carnation DB

Dca3862.1

Annotation

8-exons
f-1
sp|B9HZJ9_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_889019#GO:0005525;GO:0051020;GO:0005085#3F0P0C
AT4G16340.1 | Symbols: SPK1 | guanyl-nucleotide exchange factors;GTPase binding;GTP binding | chr4:9228773-9241060 REVERSE LENGTH=1830
Repeat List (scaffold11394)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca3862.1	12	245	648	28.85	234	79	4e-106
Target_name	Start	End	Length	Cov(%)
sp\|B9HZJ9_POPTR	920	1156	1848	12.82

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca3862.1	12	245	648	27.16	234	75	4e-98
Target_name	Start	End	Length	Cov(%)
AT4G16340.1	903	1139	1830	12.95

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold11394	Augustus	mRNA	5779	12785	.	-	.	ID=Dca3862.1;Parent=Dca3862
scaffold11394	Augustus	exon	5779	6033	.	-	.	ID=Dca3862.1.exon1;Parent=Dca3862.1
scaffold11394	Augustus	exon	6636	7610	.	-	.	ID=Dca3862.1.exon2;Parent=Dca3862.1
scaffold11394	Augustus	exon	10560	10730	.	-	.	ID=Dca3862.1.exon3;Parent=Dca3862.1
scaffold11394	Augustus	exon	10880	11017	.	-	.	ID=Dca3862.1.exon4;Parent=Dca3862.1
scaffold11394	Augustus	exon	11765	11947	.	-	.	ID=Dca3862.1.exon5;Parent=Dca3862.1
scaffold11394	Augustus	exon	12327	12437	.	-	.	ID=Dca3862.1.exon6;Parent=Dca3862.1
scaffold11394	Augustus	exon	12555	12630	.	-	.	ID=Dca3862.1.exon7;Parent=Dca3862.1
scaffold11394	Augustus	exon	12748	12785	.	-	.	ID=Dca3862.1.exon8;Parent=Dca3862.1