Carnation DB

Dca38683.1

Annotation

8-exons
f-1
sp|A5AUE6_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#ORFNames=VITISV_021034#GO:0005524;GO:0003676;GO:0004674;GO:0005529;GO:0015074;GO:0048544#4F2P0C
sp|Q1XBQ6_SOLLC#DNA mismatch repair protein#Solanum lycopersicum (Tomato) (Lycopersicon esculentum)#Name=MSH1#GO:0005622;GO:0005524;GO:0030983;GO:0004518;GO:0006298#3F1P1C
Repeat List (scaffold4154)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca38683.1	117	252	748	6.28	136	35	2e-16
Target_name	Start	End	Length	Cov(%)
sp\|A5AUE6_VITVI	1	132	2026	6.51

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca38683.1	629	748	748	9.35	120	59	1e-36
Target_name	Start	End	Length	Cov(%)
AT3G24320.1	999	1115	1118	10.46

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold4154	Augustus	mRNA	25055	39266	.	+	.	ID=Dca38683.1;Parent=Dca38683
scaffold4154	Augustus	exon	25055	25169	.	+	.	ID=Dca38683.1.exon1;Parent=Dca38683.1
scaffold4154	Augustus	exon	26441	27283	.	+	.	ID=Dca38683.1.exon2;Parent=Dca38683.1
scaffold4154	Augustus	exon	28939	29540	.	+	.	ID=Dca38683.1.exon3;Parent=Dca38683.1
scaffold4154	Augustus	exon	35762	35806	.	+	.	ID=Dca38683.1.exon4;Parent=Dca38683.1
scaffold4154	Augustus	exon	35893	35955	.	+	.	ID=Dca38683.1.exon5;Parent=Dca38683.1
scaffold4154	Augustus	exon	36470	36543	.	+	.	ID=Dca38683.1.exon6;Parent=Dca38683.1
scaffold4154	Augustus	exon	38609	38888	.	+	.	ID=Dca38683.1.exon7;Parent=Dca38683.1
scaffold4154	Augustus	exon	39042	39266	.	+	.	ID=Dca38683.1.exon8;Parent=Dca38683.1