Dca38812.1
Annotation
- 2-exons
- f-1
- sp|Q10JY5_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os03g29035#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold4176)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca38812.1 |
1 |
231 |
265 |
58.49 |
231 |
57 |
2e-77
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q10JY5_ORYSJ |
206 |
476 |
767 |
35.33 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca38812.1 |
111 |
260 |
265 |
23.39 |
150 |
42 |
1e-30
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
549 |
698 |
1428 |
10.5 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold4176 |
Augustus |
mRNA |
2310 |
3860 |
. |
- |
. |
ID=Dca38812.1;Parent=Dca38812 |
| scaffold4176 |
Augustus |
exon |
2310 |
2803 |
. |
- |
. |
ID=Dca38812.1.exon1;Parent=Dca38812.1 |
| scaffold4176 |
Augustus |
exon |
3557 |
3860 |
. |
- |
. |
ID=Dca38812.1.exon2;Parent=Dca38812.1 |
