Carnation DB

Dca39015.1

Annotation

6-exons
f-1
sp|B9HKP0_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_820204#GO:0016021;GO:0016192#0F1P1C
AT3G54300.1 | Symbols: ATVAMP727, VAMP727 | vesicle-associated membrane protein 727 | chr3:20108355-20110127 REVERSE LENGTH=240
Repeat List (scaffold420)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca39015.1	98	316	316	56.01	219	81	1e-101
Target_name	Start	End	Length	Cov(%)
sp\|B9HKP0_POPTR	22	238	238	91.17

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca39015.1	98	316	316	54.74	219	79	3e-101
Target_name	Start	End	Length	Cov(%)
AT3G54300.1	21	238	240	90.83

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold420	Augustus	mRNA	99625	105648	.	+	.	ID=Dca39015.1;Parent=Dca39015
scaffold420	Augustus	exon	99625	99931	.	+	.	ID=Dca39015.1.exon1;Parent=Dca39015.1
scaffold420	Augustus	exon	102436	102549	.	+	.	ID=Dca39015.1.exon2;Parent=Dca39015.1
scaffold420	Augus-PASA	exon	102640	102841	.	+	.	ID=Dca39015.1.exon3;Parent=Dca39015.1
scaffold420	Augus-PASA	exon	102940	103060	.	+	.	ID=Dca39015.1.exon4;Parent=Dca39015.1
scaffold420	Augus-PASA	exon	105350	105412	.	+	.	ID=Dca39015.1.exon5;Parent=Dca39015.1
scaffold420	Augus-PASA	exon	105505	105648	.	+	.	ID=Dca39015.1.exon6;Parent=Dca39015.1