Carnation DB

Dca39609.1

Annotation

6-exons
f-1
sp|A9PD53_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_815294#GO:0016881;GO:0005524#2F0P0C
sp|B9RIG7_RICCO#Ubiquitin-conjugating enzyme E2 C, putative#Ricinus communis (Castor bean)#ORFNames=RCOM_1578930#GO:0005524;GO:0004842#2F0P0C
Repeat List (scaffold43)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca39609.1	1	183	183	78.14	183	78	1e-78
Target_name	Start	End	Length	Cov(%)
sp\|A9PD53_POPTR	1	182	183	99.45

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca39609.1	1	179	183	75.4	179	77	4e-74
Target_name	Start	End	Length	Cov(%)
AT3G20060.1	1	178	181	98.34

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold43	Augus-PASA	mRNA	244840	246748	.	+	.	ID=Dca39609.1;Parent=Dca39609
scaffold43	Augus-PASA	exon	244840	244961	.	+	.	ID=Dca39609.1.exon1;Parent=Dca39609.1
scaffold43	Augus-PASA	exon	245410	245437	.	+	.	ID=Dca39609.1.exon2;Parent=Dca39609.1
scaffold43	Augus-PASA	exon	245882	246109	.	+	.	ID=Dca39609.1.exon3;Parent=Dca39609.1
scaffold43	Augus-PASA	exon	246209	246272	.	+	.	ID=Dca39609.1.exon4;Parent=Dca39609.1
scaffold43	Augus-PASA	exon	246492	246551	.	+	.	ID=Dca39609.1.exon5;Parent=Dca39609.1
scaffold43	Augus-PASA	exon	246699	246748	.	+	.	ID=Dca39609.1.exon6;Parent=Dca39609.1