Carnation DB

Dca3976.1

Annotation

5-exons
f-1
sp|A9PBF1_POPTR#Putative uncharacterized protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#unknown#unknown#0F0P0C
Os01t0966500-02 Similar to Vacuolar protein sorting 55 containing protein.
Repeat List (scaffold1144)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca3976.1	34	155	155	68.38	122	87	9e-58
Target_name	Start	End	Length	Cov(%)
sp\|A9PBF1_POPTR	5	126	126	96.82

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca3976.1	34	155	155	65.16	122	83	1e-54
Target_name	Start	End	Length	Cov(%)
Os01t0966500-02	48	169	170	71.76

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1144	Augustus	mRNA	54042	57152	.	+	.	ID=Dca3976.1;Parent=Dca3976
scaffold1144	Augustus	exon	54042	54148	.	+	.	ID=Dca3976.1.exon1;Parent=Dca3976.1
scaffold1144	Augustus	exon	54237	54288	.	+	.	ID=Dca3976.1.exon2;Parent=Dca3976.1
scaffold1144	Augustus	exon	55744	55783	.	+	.	ID=Dca3976.1.exon3;Parent=Dca3976.1
scaffold1144	Augustus	exon	55880	55964	.	+	.	ID=Dca3976.1.exon4;Parent=Dca3976.1
scaffold1144	Augustus	exon	56969	57152	.	+	.	ID=Dca3976.1.exon5;Parent=Dca3976.1