Dca4006.1
Annotation
- 4-exons
- f-1
- sp|F6H0Q3_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_18s0001g05740#GO:0005622;GO:0003677;GO:0008270#2F0P1C
- sp|B9GUW9_POPTR#Methyl binding domain protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#Name=MBD908#GO:0005634;GO:0003677;GO:0008270#2F0P1C
- Repeat List (scaffold11467)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca4006.1 |
1235 |
1409 |
1410 |
4.82 |
175 |
39 |
3e-24
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|F6H0Q3_VITVI |
998 |
1165 |
1168 |
14.38 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca4006.1 |
1353 |
1407 |
1410 |
1.48 |
55 |
39 |
4e-06
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0485700-01 |
822 |
873 |
886 |
5.86 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold11467 |
Augustus |
mRNA |
4801 |
12482 |
. |
+ |
. |
ID=Dca4006.1;Parent=Dca4006 |
| scaffold11467 |
Augustus |
exon |
4801 |
5828 |
. |
+ |
. |
ID=Dca4006.1.exon1;Parent=Dca4006.1 |
| scaffold11467 |
Augustus |
exon |
8572 |
8707 |
. |
+ |
. |
ID=Dca4006.1.exon2;Parent=Dca4006.1 |
| scaffold11467 |
Augustus |
exon |
8805 |
11516 |
. |
+ |
. |
ID=Dca4006.1.exon3;Parent=Dca4006.1 |
| scaffold11467 |
Augustus |
exon |
12126 |
12482 |
. |
+ |
. |
ID=Dca4006.1.exon4;Parent=Dca4006.1 |
