Carnation DB

Dca40271.1

Annotation

7-exons
f-1
sp|B9HM06_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_563805#unknown#0F0P0C
Os12t0102200-01 LisH dimerisation motif domain containing protein.
Repeat List (scaffold440)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca40271.1	17	240	241	78	224	80	5e-101
Target_name	Start	End	Length	Cov(%)
sp\|B9HM06_POPTR	29	262	263	88.97

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca40271.1	17	230	241	64.31	214	68	3e-84
Target_name	Start	End	Length	Cov(%)
Os12t0102200-01	29	256	260	87.69

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold440	Augustus	mRNA	115365	119502	.	+	.	ID=Dca40271.1;Parent=Dca40271
scaffold440	Augustus	exon	115365	115548	.	+	.	ID=Dca40271.1.exon1;Parent=Dca40271.1
scaffold440	Augustus	exon	117577	117665	.	+	.	ID=Dca40271.1.exon2;Parent=Dca40271.1
scaffold440	Augustus	exon	117760	117882	.	+	.	ID=Dca40271.1.exon3;Parent=Dca40271.1
scaffold440	Augustus	exon	118358	118461	.	+	.	ID=Dca40271.1.exon4;Parent=Dca40271.1
scaffold440	Augustus	exon	118567	118592	.	+	.	ID=Dca40271.1.exon5;Parent=Dca40271.1
scaffold440	Augustus	exon	118676	118826	.	+	.	ID=Dca40271.1.exon6;Parent=Dca40271.1
scaffold440	Augustus	exon	119454	119502	.	+	.	ID=Dca40271.1.exon7;Parent=Dca40271.1