Carnation DB

Dca40953.1

Annotation

6-exons
f-1
sp|A9P949_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_818989#unknown#0F0P0C
AT1G16240.1 | Symbols: SYP51, ATSYP51 | syntaxin of plants 51 | chr1:5555183-5556340 REVERSE LENGTH=232
Repeat List (scaffold4506)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca40953.1	1	190	256	49.6	190	67	3e-69
Target_name	Start	End	Length	Cov(%)
sp\|A9P949_POPTR	1	190	231	82.25

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca40953.1	1	190	256	44.14	190	60	3e-57
Target_name	Start	End	Length	Cov(%)
AT1G16240.1	1	189	232	81.46

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold4506	Augus-PASA	mRNA	18047	21305	.	-	.	ID=Dca40953.1;Parent=Dca40953
scaffold4506	Augus-PASA	exon	18047	18058	.	-	.	ID=Dca40953.1.exon1;Parent=Dca40953.1
scaffold4506	Augus-PASA	exon	18821	18957	.	-	.	ID=Dca40953.1.exon2;Parent=Dca40953.1
scaffold4506	Augustus	exon	19268	19364	.	-	.	ID=Dca40953.1.exon3;Parent=Dca40953.1
scaffold4506	Augus-PASA	exon	19458	19558	.	-	.	ID=Dca40953.1.exon4;Parent=Dca40953.1
scaffold4506	Augus-PASA	exon	19671	19876	.	-	.	ID=Dca40953.1.exon5;Parent=Dca40953.1
scaffold4506	Augustus	exon	21088	21305	.	-	.	ID=Dca40953.1.exon6;Parent=Dca40953.1