Carnation DB

Dca41655.1

Annotation

5-exons
f-1
sp|B9N224_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_580788#unknown#0F0P0C
AT1G13340.1 | Symbols: | Regulator of Vps4 activity in the MVB pathway protein | chr1:4569622-4571043 REVERSE LENGTH=409
Repeat List (scaffold463)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca41655.1	11	184	212	39.15	174	47	8e-39
Target_name	Start	End	Length	Cov(%)
sp\|B9N224_POPTR	16	192	290	61.03

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca41655.1	1	182	212	39.62	182	45	5e-35
Target_name	Start	End	Length	Cov(%)
AT1G13340.1	1	187	409	45.72

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold463	Augus-PASA	mRNA	90070	91123	.	-	.	ID=Dca41655.1;Parent=Dca41655
scaffold463	Augus-PASA	exon	90070	90146	.	-	.	ID=Dca41655.1.exon1;Parent=Dca41655.1
scaffold463	Augus-PASA	exon	90245	90359	.	-	.	ID=Dca41655.1.exon2;Parent=Dca41655.1
scaffold463	Augus-PASA	exon	90454	90625	.	-	.	ID=Dca41655.1.exon3;Parent=Dca41655.1
scaffold463	Augus-PASA	exon	90758	90861	.	-	.	ID=Dca41655.1.exon4;Parent=Dca41655.1
scaffold463	Augus-PASA	exon	90953	91123	.	-	.	ID=Dca41655.1.exon5;Parent=Dca41655.1