Carnation DB

Dca42024.1

Annotation

6-exons
f-1
sp|D5ABW9_PICSI#Putative uncharacterized protein#Picea sitchensis (Sitka spruce) (Pinus sitchensis)#unknown#GO:0005634;GO:0000166;GO:0003723;GO:0008270#3F0P1C
sp|B9SRG2_RICCO#U2 snrnp auxiliary factor, small subunit, putative#Ricinus communis (Castor bean)#ORFNames=RCOM_0382140#GO:0005634;GO:0000166;GO:0003723;GO:0008270#3F0P1C
Repeat List (scaffold47)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca42024.1	1	292	351	65.81	292	73	4e-119
Target_name	Start	End	Length	Cov(%)
sp\|D5ABW9_PICSI	1	317	334	94.91

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca42024.1	1	283	351	56.41	283	68	3e-99
Target_name	Start	End	Length	Cov(%)
AT5G42820.2	1	281	283	99.29

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold47	Augus-PASA	mRNA	192022	196808	.	+	.	ID=Dca42024.1;Parent=Dca42024
scaffold47	Augus-PASA	exon	192022	192258	.	+	.	ID=Dca42024.1.exon1;Parent=Dca42024.1
scaffold47	Augus-PASA	exon	194658	194744	.	+	.	ID=Dca42024.1.exon2;Parent=Dca42024.1
scaffold47	Augus-PASA	exon	194846	195054	.	+	.	ID=Dca42024.1.exon3;Parent=Dca42024.1
scaffold47	Augustus	exon	195144	195550	.	+	.	ID=Dca42024.1.exon4;Parent=Dca42024.1
scaffold47	Augustus	exon	195693	195757	.	+	.	ID=Dca42024.1.exon5;Parent=Dca42024.1
scaffold47	Augustus	exon	196758	196808	.	+	.	ID=Dca42024.1.exon6;Parent=Dca42024.1