Dca42066.1
Annotation
- 3-exons
- f-1
- sp|Q2QTW2_ORYSJ#Retrotransposon protein, putative, Ty3-gypsy subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g18320#GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006278#3F2P0C
- Repeat List (scaffold470)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca42066.1 |
4 |
585 |
595 |
46.21 |
582 |
45 |
8e-135
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QTW2_ORYSJ |
17 |
631 |
1226 |
50.16 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca42066.1 |
326 |
585 |
595 |
22.18 |
260 |
51 |
2e-74
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os04t0191000-01 |
571 |
826 |
1539 |
16.63 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold470 |
Augustus |
mRNA |
128465 |
130854 |
. |
+ |
. |
ID=Dca42066.1;Parent=Dca42066 |
| scaffold470 |
Augustus |
exon |
128465 |
129364 |
. |
+ |
. |
ID=Dca42066.1.exon1;Parent=Dca42066.1 |
| scaffold470 |
Augustus |
exon |
129453 |
129516 |
. |
+ |
. |
ID=Dca42066.1.exon2;Parent=Dca42066.1 |
| scaffold470 |
Augustus |
exon |
130031 |
130854 |
. |
+ |
. |
ID=Dca42066.1.exon3;Parent=Dca42066.1 |
