Carnation DB

Dca42323.1

Annotation

10-exons
f-1
sp|D7SZP2_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_05s0049g01940#GO:0005622;GO:0003676;GO:0000166;GO:0006810#2F1P1C
AT5G43960.1 | Symbols: | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain | chr5:17689154-17691653 REVERSE LENGTH=450
Repeat List (scaffold475)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca42323.1	5	448	454	55.06	444	56	2e-132
Target_name	Start	End	Length	Cov(%)
sp\|D7SZP2_VITVI	8	448	475	92.84

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca42323.1	1	397	454	40.3	397	46	8e-80
Target_name	Start	End	Length	Cov(%)
AT5G43960.1	1	395	450	87.77

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold475	Augustus	mRNA	133026	140239	.	-	.	ID=Dca42323.1;Parent=Dca42323
scaffold475	Augustus	exon	133026	133044	.	-	.	ID=Dca42323.1.exon1;Parent=Dca42323.1
scaffold475	Augustus	exon	133250	133385	.	-	.	ID=Dca42323.1.exon2;Parent=Dca42323.1
scaffold475	Augus-PASA	exon	133925	134000	.	-	.	ID=Dca42323.1.exon3;Parent=Dca42323.1
scaffold475	Augus-PASA	exon	134523	134588	.	-	.	ID=Dca42323.1.exon4;Parent=Dca42323.1
scaffold475	Augus-PASA	exon	134692	134813	.	-	.	ID=Dca42323.1.exon5;Parent=Dca42323.1
scaffold475	Augus-PASA	exon	135221	135437	.	-	.	ID=Dca42323.1.exon6;Parent=Dca42323.1
scaffold475	Augus-PASA	exon	135555	135811	.	-	.	ID=Dca42323.1.exon7;Parent=Dca42323.1
scaffold475	Augus-PASA	exon	136509	136815	.	-	.	ID=Dca42323.1.exon8;Parent=Dca42323.1
scaffold475	Augus-PASA	exon	139928	140062	.	-	.	ID=Dca42323.1.exon9;Parent=Dca42323.1
scaffold475	Augus-PASA	exon	140210	140239	.	-	.	ID=Dca42323.1.exon10;Parent=Dca42323.1